The 16-year-old has struggled all season with fitness problems, despite impressing when he does play.
He went onto Instagram and posted a photo of his left foot with a protective boot.
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He wrote: "Alhamdulillah Always (bandaged heart emoji)," along with the image.
Ibragimov was involved for England's Under-16 team against Belgium in a friendly game.
There is no more information about the exact nature of the injury or duration he will be absent.