Aleksandar Pavlovic, Kingsley Coman, Leroy Sane and Noussair Mazraoui are also fit for selection, after training this morning.
All four were missing from Saturday's surprise 3-2 defeat to FC Heidenheim.
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Neuer was missing for the past two games due to an adductor tear.
Bayern are now 16 points behind Bundesliga leaders Bayer Leverkusen, with the Champions League now the priority.