A tribute will be paid to the victims of the Christchurch shootings before England's match against the Czech Republic at Wembley on 22 March.
The Premier League, English Football League and Football Association were accused of "double standards" for not marking the attack over the weekend.
But a statement from the FA said: "We will remember everyone affected by the terrible events in Christchurch."
It added: "We will pay tribute to the victims of the tragedy in New Zealand at the England v Czech Republic match on Friday, 22 March."